Taking place a few years after the first Ghost In The Shell manga. The Major has been missing since then and Ghost in the Shell 2 follows the mysterious Motoko Aramaki as she runs an investigation into a incident at an organ factory and it's consequences. she's on the run to clean up the mess and save herself in the process Meanwhile the former members of section 9 investigate Motoko to find out who she really is.

(Source: ANN)